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On the population genetic structure of sockeye salmon (Oncorhynchus nerka) in the Kurile Lake

https://doi.org/10.15853/2072-8212.2025.76.41-56

EDN: CSEBYO

Abstract

Genetic structure of sockeye salmon population in the Kurile Lake was examined for 9 microsatellite loci. Average estimates of heterozygosity for different loci ranged from 0.260 to 0.906. Pairwise differentiation (Fst) analysis showed differences between samples of different seasonal forms only. The results of the study based on Bayesian clustering of samples in the software package “Structure” allowed us to identify two clearly separating clusters coinciding with the separation of samples by spawning time. The results revealed that all samples of the early run had passed the bottle-neck stage. The observed decline in stock abundance is most likely relatively recent.

About the Authors

O. A. Pilganchuk
Kamchatka Branch of Russian Federal Research Institute of Fisheries and Oceanography
Russian Federation

Oksana A. Pilganchuk – Ph. D. (Biology), Head of Lab.

Petropavlovsk-Kamchatsky



V. V. Kryzhenovskaya
Vitus Bering Kamchatka State University
Russian Federation

Valentina V. Kryzhenovskaya – Masterʼs degree student

Petropavlovsk-Kamchatsky



A. D. Denisenko
Kamchatka Branch of Russian Federal Research Institute of Fisheries and Oceanography
Russian Federation

Anastasiya D. Denisenko – Leading Specialist

Petropavlovsk-Kamchatsky



V. V. Savenkov
Kamchatka Branch of Russian Federal Research Institute of Fisheries and Oceanography
Russian Federation

Vladimir V. Savenkov – Leading Specialist

Petropavlovsk-Kamchatsky



U. A. Muravskaya
Kamchatka Branch of Russian Federal Research Institute of Fisheries and Oceanography
Russian Federation

Ulyana O. Muravskaya – Leading Specialist

Petropavlovsk-Kamchatsky



References

1. Altukhov Yu.P. Populyatsionnaya genetika ryb [Population genetics of fish] Moscow: Food industry, 1974, 245 p.

2. Bugaev V.F. Aziatskaya nerka (presnovodnyi period zhizni, structura localnykh stad, dinamika chislennosti) [Asian sockeye salmon (freshwater period of life, structure of local stocks, abundance dynamics)]. Moscow: Kolos, 1995, 464 p.

3. Varnavskaya N.V. Spatial and temporal genetic structure in the population system of sockeye salmon of Lake Kurilskoye (Kamchatka). Abstract of the III All-Union Conference on Salmon-like Fishes, 1988, Tolyatti: IEVB, pp. 49–51. (In Russ.)

4. Varnavskaya N.V. Geneticheskaya differentsiatsiya populatsiy tokhookeanskikh lososey [Genetic differentiation of Pacific salmon populations]. Petropavlovsk-Kamchatsky: KamchatNIRO, 2006, 488 p. EDN: QKOYTL.

5. Vronskiy B.B. Status of Far Eastern salmon stocks. Biology of salmonids: Abstract of the report of the Int. quadripartite conference (USSR, USA, Canada, Japan) (Yuzhno-Sakhalinsk, October 1978). Vladivostok: TINRO, 1978, pp. 3–5. (In Russ.)

6. Dubynin V.A. Variability of biological indices and abundance dynamics of the Ozernaya River sockeye salmon Oncorhynchus nerka (Walbaum) stock in the modern period (1971–2020). The researches of the aquatic biological resources of Kamchatka and the north-west part of the Pacific Ocean, 2023, vol. 71, pp. 60–79. (In Russ.) EDN: TXGEJJ. doi:10.15853/2072-8212.2023.71.60-79

7. Yegorova T.V. The main patterns determining the dynamics of the red Oncorhynchus nerka (Walbaum) population in the Ozernaya River basin: Abstract of Cand. Sci. (Biol.) Dissertation. Vladivostok: TINRO, 1968, 22 p. (In Russ.)

8. Yegorova T.V. On the absence of seasonal groups of the red fish in the Ozernaya River basin. Izvestiya TINRO, 1970, vol. 78, pp. 43–47. (In Russ.)

9. Yegorova T.V., Krogius F.V., Kurenkov I.I., Semko R.S. Causes of fluctuations in the number of the red river Ozernoy. Journal of Ichthyology, 1961, vol. 1, no. 3 (20), pp. 439–447. (In Russ.)

10. Ivankov V.N., Ivankova E.V. Anthropogenic impact on intraspecific ecological-temporal differentiation and structure of populations of pacific salmons. Izvestiya TINRO, 2015, vol. 181, pp. 23–34. (In Russ.) EDN: TVWUNT. https://doi.org/10.26428/16069919-2015-181-23-34

11. Konovalov S.M. Populyatsionnaya biologiya tikhookeanskikh lososey [Population biology of Pacific salmon]. Moscow: Nauka, 1980, 238 p.

12. Krogius F.V. Japanese open-sea salmon fishery and its impact on red salmon stocks. Rybnoye khozyaistvo, 1961, no. 2, pp. 33–36. (In Russ.)

13. Krogius F.V. Seasonal races of the red Oncorhynchus nerka (Walb.) and its spawning grounds in the water bodies of Kamchatka. Biological foundations of the development of salmon farming in the water bodies of the USSR. Moscow: Nauka, 1983, pp. 18–31. (In Russ.) Krokhin Ye.M., Krogius F.V. Outline of the Kurile Lake and the biology of the red Oncorhynchus nerka (Walb.) in its basin. Tr. Tikhookeanskogo Komiteta, vol. IV, Kurilskoye ozero. M.-L.: AN SSSR, 1937, 187 p. (In Russ.)

14. Lepskaya E.V. To the 80th anniversary of the Ozernovsky observation station of KamchatNIRO on the Kurile Lake. The researches of the aquatic biological resources of Kamchatka and the northwest part of the Pacific Ocean, 2021, vol. 63, pp. 5–8. Maniatis T., Fritsch E.F., Sambrook J. Molekulyarnoe klonirovanie [Molecular Cloning.] Moscow: Mir, 1984, 479 p.

15. Matsak E.A. Genetic heterogeneity of sockeye salmon (Oncorhynchus nerka) from Kurilskoye Lake during the spawning run. Abstract of the 10th All-Union Symposium. Part 2: Biological Problems of the North. Magadan, 1983, pp. 194–195. (In Russ.)

16. Ostroumov A.G. Results of aerial visualization and aerial photography of red and its spawning grounds in the basin of Lake Kurilsky. Izvestiya TINRO, 1970, vol. 78, pp. 17–31. (In Russ.)

17. Pilganchuk O.A., Muravskaya U.O., Savenkov V.V., Denisenko A.D., Zikunova O.V., Fadeev E.S. Genetic differentiation of sockeye salmon (Oncorhynchus nerka) in Lake Azabachye based on the results of microsatellite DNA study. Fishery Science. History, Modernity, Prospects: Proc. of the Int. scientificpractical. conf. (St. Petersburg, October 23–24, 2024). Moscow: VNIRO, 2024, pp. 460–464. EDN: EBKEJZ. (In Russ.)

18. Pilganchuk O.A. Genetic structure of sockeye salmon, Oncorhynchus nerka (Walbaum), of the Kamchatka Peninsula: Diss. … Cand. Biol. Sci. Vladivostok, 2015, 135 p. EDN: CTGRFK. (In Russ.) Pilganchuk О.A., Varnavskaya N.V., Bichem T.D. Characterization of population structure on the nuclear microsatellite DNA variations for sockeye salmon from Kurilskoye Lake and Kamchatka River. The researches of the aquatic biological resources of

19. Kamchatka and the north-west part of the Pacific Ocean, 2010, vol. 18, pp. 28–37. (In Russ.) EDN: MWGAUJ.

20. Pilganchuk O.A., Shpigalskaya N.Yu., Dubynin V.A., Saravanskiy O.N., Muravskaya U.O., Varnavskaya N.V. Identification of early river form of sockeye salmon in the Ozernaya River basin with microsatellite loci. The researches of the aquatic biological resources of Kamchatka and the north-west part of the Pacific Ocean, 2014, vol. 34, pp. 62–71. (In Russ.) EDN: YPVDYO.

21. Pilganchuk O.A., Shpigalskaya N.Yu., Dubynin V.A., Shevlyakov E.A., Nigmatulina E.A., Kositsyna A.I., Saravanskiy O.N. Preliminary results of the assessment of genetic heterogeneity of the spawning run of sockeye salmon of the Ozernaya River. Aquatic biol. resources of the northern part of the Pacific Ocean: status, monitoring, management: Proc. All-Russian scientific conf. PetropavlovskKamchatsky: KamchatNIRO, 2012, pp. 431–438. (In Russ.)

22. Rubtsova G.A., Ponomarevac E.V., Afanasieva K.I., Shaikhaev E.G., Kholodova M.V., Pavlov S.D., Zhivotovsky L.A. A Detection of allelic variants at microsatellite markers by using capillary and traditional electrophoresis. Genetika, 2016, vol. 52, no. 4, pp. 482. (In Russ.) EDN: VVGOPH. doi:10.7868/ S0016675816040081

23. Selifonov M.M. Fishing and reproduction of the red salmon in the Ozernaya River basin: Abstract of Cand. Sci. (Biol.) Dissertation. Vladivostok: TINRO, 1975, 23 p.

24. Botstein D., White R.L., Skolnick M.H., Davis R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet., 1980, vol. 32, pp. 314–331.

25. Cornuet J.M., Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 1996, vol. 144, pp. 2001–2014. doi:10.1093/genetics/144.4.2001

26. Di Rienzo A., Peterson A.C., Garza J.C., Valdes A.M., Slatkin M., Freimer N.B. 1994. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA, 1994, vol. 91, pp. 3166–3170.

27. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software structure: a simulation study. Mol. Ecol., 2005, vol. 14, pp. 2611–2620. EDN: MEKJRR. doi:10.1111/j.1365-294X.2005.02553.x

28. Excoffier L., Lischer H.E.L. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res., 2010, vol. 10, pp. 564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

29. Goudet J. FSTAT (version 1.2): a computer program to calculate F-statistics J. Heredity, 1995. vol. 86, pp. 485–486. EDN: IRTQRR. doi:10.1093/oxford-journals.jhered.a111627

30. Jackson T.R., Ferguson M.M., Danzmann R.G., Fishback A.G., Ihssen P.E., OʼConnell M., Crease T.J. Identification of two QTL-influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. J. Heredity, 1998, vol. 80, pp. 143–151. doi:10.1046/j.1365-2540.1998.00289.x

31. Li Y.L., Liu J.X. StructureSelector: a web based software to select and visualize the optimal number of clusters using multiple methods. Mol. Ecol. Res., 2018, vol. 18, pp. 176–177. doi:10.1111/1755-0998.12719

32. Luikart G., Cornuet J.M. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conservat. Biol., 1998, vol. 12, pp. 1523–1739. doi:10.1111/j.1523-1739.1998.96388.x

33. Nei M. Molecular evolutionary genetics. N.Y.: Columbia Univ. Press., 1987, 512 p. doi:10.7312/nei92038

34. Nelson R.J., Beacham T.D. Isolation cross species amplification of microsatellite loci useful for study of Pacific salmon. Animal Genetics, 1999, vol. 30, pp. 228–229. doi:10.1046/j.1365-2052.1999.00404-4.x

35. Olsen J.B., Wilson S.L., Kretschmer E.J., Jones K.C., Seeb J.E. Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon. Mol. Ecol., 2000, vol. 9, pp. 2185–2187. EDN: BFAZRV. doi:10.1046/j.1365-294X.2000.105317.x

36. Peakall R., Smouse P.E. GenAlEx 6: Genetic analysis in excel. Population genetic software for teaching and research. Mol. Ecol., 2006. Vol. 6, pp. 288–295. doi:10.1111/j.1471-8286.2005.01155.x

37. Piry S., Luikart G., Cornuet J.M. Bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Heredity, 1999, vol. 90, pp. 502–503. EDN: IROWET. doi:10.1093/jhered/90.4.502

38. Pritchard J.K., Stefens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, vol. 155, pp. 945–959. doi:10.1093/genetics/155.2.945

39. Puechmaille S.J. The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 2016, 16 (3), pp. 608–627. doi:10.1111/1755-0998.12512

40. Rexroad C.E., Coleman R.L., Gustafson A.L., Hershberger W.K., Killefer J. Development of rainbow trout microsatellite markers from repeat enriched libraries. Mar. Biotechnol, 2002, vol. 4 (1), pp. 12–16. doi:10.1007/s10126-001-0058-6

41. Smith C.T., Koop B.F., Nelson R.J. Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids. Mol. Ecol., 1998, vol. 7, pp. 1613–1621.

42. Williamson K.S., Cordes J.F., May B. Characterization of microsatellite loci in Chinook salmon (Oncorhynchus tschawytscha) and cross-species amplification in other salmonids. Mol. Ecol. Notes, 2002, vol. 2, pp. 17–19. EDN: BAPUOT. doi:10.1046/j.1471-8278.2001.00129.x


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Pilganchuk O.A., Kryzhenovskaya V.V., Denisenko A.D., Savenkov V.V., Muravskaya U.A. On the population genetic structure of sockeye salmon (Oncorhynchus nerka) in the Kurile Lake. The researches of the aquatic biological resources of Kamchatka and the North-West Part of the Pacific Ocean. 2025;(76):41-56. (In Russ.) https://doi.org/10.15853/2072-8212.2025.76.41-56. EDN: CSEBYO

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